SGN Marker C2_At2g37560

SGN-M7432
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310072 (SGN)
129806 (CGN)		---
Capsicum annuumSingleSGN-U204751---
Lycopersicon CombinedSingleSGN-U221168---
Solanum tuberosumSingleSGN-U256067---
ArabidopsisSingleAt2g37560 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25852)
Chromosome
2
Position
15.77 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41279
Forward primer (5'-3')
AGCTAGTATTGAGCCCAAACATGAG
Accessions and product sizes
Solanum pennellii TA56
400
Solanum lycopersicum TA209
380
Approximate temperature
53°C
Reverse primer (5'-3')
TCTTCAATCAAAGCTTTCTTTGATCC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
400
Solanum lycopersicum TA209
380
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32284
Forward primer (5'-3')
AGCTAGTATTGAGCCCAAACATGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCAATCAAAGCTTTCTTTGATCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 260
 Approximate temperature
55°C
  
PCR data   Exp. ID 32285
Forward primer (5'-3')
AGCTAGTATTGAGCCCAAACATGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCAATCAAAGCTTTCTTTGATCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 260
 Approximate temperature
55°C
  
PCR data   Exp. ID 32286
Forward primer (5'-3')
AGCTAGTATTGAGCCCAAACATGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCAATCAAAGCTTTCTTTGATCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 260
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g37560  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7432 marker 7432
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