SGN Marker C2_At2g39100

SGN-M7457
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306471 (SGN)
126698 (CGN)
---
Capsicum annuumSingleSGN-U205436---
Lycopersicon CombinedSingleSGN-U222749---
ArabidopsisSingleAt2g39100 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25879)
Chromosome
2
Position
16.33 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41290
Forward primer (5'-3')
TGAAGAGAGATTGCAGGCTGTTCC
Accessions and product sizes
Solanum lycopersicum TA209
1700
Approximate temperature
55°C
Reverse primer (5'-3')
AGAATGGGCTCTCGGCAAAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32290
Forward primer (5'-3')
TGAAGAGAGATTGCAGGCTGTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGAATGGGCTCTCGGCAAAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1500
Approximate temperature
55°C
  
PCR data   Exp. ID 32291
Forward primer (5'-3')
TGAAGAGAGATTGCAGGCTGTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGAATGGGCTCTCGGCAAAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1500
Approximate temperature
55°C
  
PCR data   Exp. ID 32292
Forward primer (5'-3')
TGAAGAGAGATTGCAGGCTGTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGAATGGGCTCTCGGCAAAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1500
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g39100  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7457 marker 7457
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