SGN Marker C2_At2g39570

SGN-M7461
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U204219---
Lycopersicon CombinedSingleSGN-U218174---
Solanum tuberosumMultipleSGN-U244269---
ArabidopsisSingleAt2g39570 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25883)
Chromosome
2
Position
16.52 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41291
Forward primer (5'-3')
TGGGACGATGTCGTTTTGATTGAAC
Accessions and product sizes
Solanum lycopersicum TA209
1000
Solanum pennellii TA56
1000
Approximate temperature
55°C
Reverse primer (5'-3')
ATGTAGCAATCCTTTCCTGTCTAGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32293
Forward primer (5'-3')
TGGGACGATGTCGTTTTGATTGAAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGTAGCAATCCTTTCCTGTCTAGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1550
 Approximate temperature
55°C
  
PCR data   Exp. ID 32294
Forward primer (5'-3')
TGGGACGATGTCGTTTTGATTGAAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGTAGCAATCCTTTCCTGTCTAGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1550
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g39570  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7461 marker 7461
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