SGN Marker C2_At2g39780

SGN-M7465
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300806 (SGN)
124330 (CGN)		---
Lycopersicon CombinedMultipleSGN-U220195---
Solanum tuberosumSingleSGN-U248530---
ArabidopsisSingleAt2g39780 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25887)
Chromosome
2
Position
16.60 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41294
Forward primer (5'-3')
ACACGGGACATGTTCTTATCCAGTTG
Accessions and product sizes
Solanum pennellii TA56
350
Solanum lycopersicum TA209
350
Approximate temperature
55°C
Reverse primer (5'-3')
AGCATATTCTTAGTTCCTCCACCGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10835
Forward primer (5'-3')
ACACGGGACATGTTCTTATCCAGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCATATTCTTAGTTCCTCCACCGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 950
 Approximate temperature
55°C
  
PCR data   Exp. ID 10836
Forward primer (5'-3')
ACACGGGACATGTTCTTATCCAGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCATATTCTTAGTTCCTCCACCGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 900
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U220195
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g39780  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7465 marker 7465
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