SGN Marker C2_At2g40640

SGN-M7475
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle299546 (SGN)
121982 (CGN)		---
Lycopersicon CombinedSingleSGN-U237228---
ArabidopsisSingleAt2g40640 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25897)
Chromosome
2
Position
16.97 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41298
Forward primer (5'-3')
TCGATCTGCAATTCAAGCATTCCG
Accessions and product sizes
Solanum lycopersicum TA209
260
Solanum pennellii TA56
260
Approximate temperature
55°C
Reverse primer (5'-3')
TCAGGAACCTTGGCTAGGGAGCG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32305
Forward primer (5'-3')
TCGATCTGCAATTCAAGCATTCCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAGGAACCTTGGCTAGGGAGCG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2500+750
 Approximate temperature
55°C
  
PCR data   Exp. ID 32306
Forward primer (5'-3')
TCGATCTGCAATTCAAGCATTCCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAGGAACCTTGGCTAGGGAGCG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2500
 Approximate temperature
55°C
  
PCR data   Exp. ID 32307
Forward primer (5'-3')
TCGATCTGCAATTCAAGCATTCCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAGGAACCTTGGCTAGGGAGCG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2500
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g40640  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7475 marker 7475
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