SGN Marker C2_At2g46580

SGN-M7547
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U204882---
Lycopersicon CombinedSingleSGN-U223013---
ArabidopsisSingleAt2g46580 on TAIR---
Mapped locations  
Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49238)
Chromosome
5
Position
59.82 MB
Confidence
uncalculated
Protocol
CAPS


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47171)
Chromosome
5
Position
79.10 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Eggplant-COSII   
Map version
63 (location: 42207)
Chromosome
5
Position
0.00 cM
Confidence
F(LOD3)
Protocol
CAPS


Eggplant-COSII

PCR data   Exp. ID 43773
Forward primer (5'-3')
TGCTGGTATTTCACTGAAACTTGGG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TCGTGCAGTAGTAAATGCTAGCCTCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Pepper-COSII   
Map version
58 (location: 41397)
Chromosome
5
Position
56.40 cM
Confidence
F(LOD3)
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43373
Forward primer (5'-3')
TGCTGGTATTTCACTGAAACTTGGG
Accessions and product sizes
Approximate temperature
58°C
Reverse primer (5'-3')
TGTTCATCTAGAGAAGGAAGCCCTCG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38401)
Chromosome
5
Position
71.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39647
Forward primer (5'-3')
TGCTGGTATTTCACTGAAACTTGGG
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TCGTGCAGTAGTAAATGCTAGCCTCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25971)
Chromosome
2
Position
19.14 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g46580  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7547 marker 7547
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)