Sol Genomics Network

SGN-M7562
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303460 (SGN) 120271 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U197147	-	-	-
Lycopersicon Combined	Single	SGN-U214962	-	-	-
Solanum tuberosum	Multiple	SGN-U244322	-	-	-
Arabidopsis	Single	At2g47590 on TAIR	-	-	-

Solanum michoacanum 2011

Tomato-EXPEN 2000

PCR data Exp. ID 39652

Forward primer (5'-3')

ACGAGCGTCGATTGTTTGGTTCC

Accessions and product sizes

Approximate temperature

Unknown

Reverse primer (5'-3')

CCAGGTTCCACATCACCTCTAGCAGGCG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10913
Forward primer (5'-3') AGCTGCTAATGCTTCCCTTGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATAACAGCTCGTACATCAGCCAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 650+400	Approximate temperature 55°C

PCR data Exp. ID 10914
Forward primer (5'-3') AGCTGCTAATGCTTCCCTTGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATAACAGCTCGTACATCAGCCAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1400+650+400	Approximate temperature 55°C

PCR data Exp. ID 10915
Forward primer (5'-3') AGCTGCTAATGCTTCCCTTGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATAACAGCTCGTACATCAGCCAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 400	Approximate temperature 55°C

PCR data Exp. ID 12264
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 580	Approximate temperature 55°C

PCR data Exp. ID 12265
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 580	Approximate temperature 55°C

PCR data Exp. ID 12266
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 580	Approximate temperature 55°C

PCR data Exp. ID 12267
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 580	Approximate temperature 55°C

PCR data Exp. ID 12268
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 580	Approximate temperature 55°C

PCR data Exp. ID 12269
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 580	Approximate temperature 55°C

PCR data Exp. ID 12270
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 580	Approximate temperature 55°C

PCR data Exp. ID 12271
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 580	Approximate temperature 55°C

PCR data Exp. ID 12272
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Physalis TA1367: 580	Approximate temperature 55°C

PCR data Exp. ID 12273
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 580	Approximate temperature 55°C

PCR data Exp. ID 12274
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 580	Approximate temperature 55°C

PCR data Exp. ID 12275
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Coffea canephora BP409: 580	Approximate temperature 55°C

PCR data Exp. ID 33340
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 580	Approximate temperature 55°C

PCR data Exp. ID 33341
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 580	Approximate temperature 55°C

PCR data Exp. ID 33342
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 580	Approximate temperature 55°C

PCR data Exp. ID 33343
Forward primer (5'-3') ACGAGCGTCGATTGTTTGGTTCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAGGATTGAGCCCCAAATCAACC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 580	Approximate temperature 55°C