Sol Genomics Network

SGN Marker C2_At3g01160

SGN-M7575
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	311437 (SGN) 127690 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U197612	-	-	-
Lycopersicon Combined	Single	SGN-U217056	-	-	-
Solanum tuberosum	Multiple	SGN-U265097	-	-	-
Arabidopsis	Single	At3g01160 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 38410)
Chromosome 2
Position 83.40 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39656

Forward primer (5'-3')

TCTGAAGAAGCTGAAGCAAGTAGAGC

Accessions and product sizes

Solanum lycopersicum TA209

1500

Solanum pennellii TA56

1500

Approximate temperature

55°C

Reverse primer (5'-3')

TGCCAACTGACGAGCATAAGCTGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25999)
Chromosome 3
Position 0.06 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 32315
Forward primer (5'-3') TCTGAAGAAGCTGAAGCAAGTAGAGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCAACTGACGAGCATAAGCTGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 420	Approximate temperature 55°C

PCR data Exp. ID 32316
Forward primer (5'-3') TCTGAAGAAGCTGAAGCAAGTAGAGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCAACTGACGAGCATAAGCTGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 420	Approximate temperature 55°C

PCR data Exp. ID 32317
Forward primer (5'-3') TCTGAAGAAGCTGAAGCAAGTAGAGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCAACTGACGAGCATAAGCTGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 420	Approximate temperature 55°C

PCR data Exp. ID 32318
Forward primer (5'-3') TCTGAAGAAGCTGAAGCAAGTAGAGC	Digested band sizes (using EcoRI) Solanum pennellii LA716: 100+290 Solanum lycopersicum LA925: 400	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCAACTGACGAGCATAAGCTGC	Enzymes All possible enzymes for pennellii and and lycopersicum: ApoI,EcoRI
Accessions and product sizes Solanum lycopersicum LA925: 420 Solanum pennellii LA716: 420	Approximate temperature 55°C

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At3g01160

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7575 marker 7575

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
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