SGN Marker C2_At3g02300

SGN-M7591
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U200073---
Lycopersicon CombinedSingleSGN-U216418---
ArabidopsisSingleAt3g02300 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38416)
Chromosome
2
Position
111.80 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39661
Forward primer (5'-3')
ATGGATATTGATGAAATACTTGGGG
Accessions and product sizes
Solanum pennellii TA56
400
Solanum lycopersicum TA209
400
Approximate temperature
55°C
Reverse primer (5'-3')
TCACTTTCTTGGGGTGCTTCCTAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26015)
Chromosome
3
Position
0.46 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10929
Forward primer (5'-3')
ATGGATATTGATGAAATACTTGGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCACTTTCTTGGGGTGCTTCCTAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1100
Approximate temperature
55°C
  
PCR data   Exp. ID 10930
Forward primer (5'-3')
ATGGATATTGATGAAATACTTGGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCACTTTCTTGGGGTGCTTCCTAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1100
Approximate temperature
55°C
  
PCR data   Exp. ID 10931
Forward primer (5'-3')
ATGGATATTGATGAAATACTTGGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCACTTTCTTGGGGTGCTTCCTAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1100
Approximate temperature
55°C
  
PCR data   Exp. ID 10932
Forward primer (5'-3')
ATGGATATTGATGAAATACTTGGGG
Digested band sizes (using TaqI)
Solanum pennellii LA716: 480+600
Solanum lycopersicum LA925: 1100
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCACTTTCTTGGGGTGCTTCCTAGC
Enzymes
All possible enzymes for pennellii and and lycopersicum: AseI,TaqI
All possible enzymes for lycopersicum and pimpinellifolium: BtgI,HaeIII,NcoI,StyI
  
Accessions and product sizes
Solanum lycopersicum LA925: 1100
Solanum pennellii LA716: 1100
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g02300F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. quitoense plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #1, plain text
Forward amplicon sequence for S. betaceum 04T132, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T132, plain text

Genomic location of C2_At3g02300  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7591 marker 7591
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