SGN Marker C2_At3g03790

SGN-M7606
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304523 (SGN)
122268 (CGN)
---
Lycopersicon CombinedSingleSGN-U240386---
Solanum tuberosumSingleSGN-U253683---
ArabidopsisSingleAt3g03790 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38422)
Chromosome
1
Position
31.30 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39667
Forward primer (5'-3')
TGAAAGCTGTTGTTGCAGCTAAACATC
Accessions and product sizes
Solanum pennellii TA56
650
Solanum lycopersicum TA209
650
Approximate temperature
55°C
Reverse primer (5'-3')
ACCCTCCTTATTGCATCCCCAAGTG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
450
Solanum lycopersicum TA209
650
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26030)
Chromosome
3
Position
0.97 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10947
Forward primer (5'-3')
TGAAAGCTGTTGTTGCAGCTAAACATC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCCTCCTTATTGCATCCCCAAGTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 450
Approximate temperature
55°C
  
PCR data   Exp. ID 10948
Forward primer (5'-3')
TGAAAGCTGTTGTTGCAGCTAAACATC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCCTCCTTATTGCATCCCCAAGTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 450
Approximate temperature
55°C
  
PCR data   Exp. ID 10949
Forward primer (5'-3')
TGAAAGCTGTTGTTGCAGCTAAACATC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
ACCCTCCTTATTGCATCCCCAAGTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 450
Approximate temperature
55°C
  
PCR data   Exp. ID 32334
Forward primer (5'-3')
TGAAAGCTGTTGTTGCAGCTAAACATC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCCTCCTTATTGCATCCCCAAGTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 450
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g03790F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At3g03790  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7606 marker 7606
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