SGN Marker C2_At3g04820

SGN-M7616
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple304651 (SGN)
120520 (CGN)
---
Capsicum annuumSingleSGN-U205401---
Lycopersicon CombinedSingleSGN-U222882---
Solanum tuberosumSingleSGN-U263046---
ArabidopsisSingleAt3g04820 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26041)
Chromosome
3
Position
1.32 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41335
Forward primer (5'-3')
TGGTGAAGTTTACCGTGACTTGGC
Accessions and product sizes
Solanum lycopersicum TA209
250
Solanum pennellii TA56
250
Approximate temperature
55°C
Reverse primer (5'-3')
TTGAAACACACGTCTGTAAGCTCC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10961
Forward primer (5'-3')
TGGTGAAGTTTACCGTGACTTGGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGAAACACACGTCTGTAAGCTCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1850
Approximate temperature
55°C
  
PCR data   Exp. ID 10962
Forward primer (5'-3')
TGGTGAAGTTTACCGTGACTTGGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGAAACACACGTCTGTAAGCTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1850
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g04820F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At3g04820  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7616 marker 7616
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