SGN Marker C2_At3g06610

SGN-M7639
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310733 (SGN)
131491 (CGN)
---
Lycopersicon CombinedSingleSGN-U217788---
Solanum tuberosumSingleSGN-U266450---
ArabidopsisSingleAt3g06610 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38434)
Chromosome
12
Position
109.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39678
Forward primer (5'-3')
AGACGAAGCGCTTGAGATGGTGG
Accessions and product sizes
Solanum pennellii TA56
1400
Solanum lycopersicum TA209
1400
Approximate temperature
55°C
Reverse primer (5'-3')
ATTATATCAATATCAGCAGCATTAATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26065)
Chromosome
3
Position
2.06 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10980
Forward primer (5'-3')
AGACGAAGCGCTTGAGATGGTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGTCCTTTCAGCAACCTTCTTGTCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2000
Approximate temperature
55°C
  
PCR data   Exp. ID 10981
Forward primer (5'-3')
AGACGAAGCGCTTGAGATGGTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGTCCTTTCAGCAACCTTCTTGTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2000
Approximate temperature
55°C
  
PCR data   Exp. ID 10982
Forward primer (5'-3')
AGACGAAGCGCTTGAGATGGTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGTCCTTTCAGCAACCTTCTTGTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2000
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g06610R.cds.txt, plain text
Reverse amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Reverse amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Reverse amplicon sequence for S. lycopersicum TA209, plain text
Reverse amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Reverse amplicon sequence for S. pennellii TA56, PDF chromatogram
Reverse amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At3g06610  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7639 marker 7639
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