SGN Marker C2_At3g09850

SGN-M7677
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple306153 (SGN)
126880 (CGN)
---
Lycopersicon CombinedSingleSGN-U219261---
Solanum tuberosumSingleSGN-U267106---
ArabidopsisSingleAt3g09850 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26103)
Chromosome
3
Position
3.02 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41356
Forward primer (5'-3')
ATGGCCGTTTGAGTCTCAAAAGAG
Accessions and product sizes
Solanum lycopersicum TA209
800
Solanum pennellii TA56
530
Approximate temperature
55°C
Reverse primer (5'-3')
TTCTCCAAACGAATTTTATCACTGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32368
Forward primer (5'-3')
ATGGCCGTTTGAGTCTCAAAAGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTCCAAACGAATTTTATCACTGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2500
Approximate temperature
55°C
  
PCR data   Exp. ID 32369
Forward primer (5'-3')
ATGGCCGTTTGAGTCTCAAAAGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTCCAAACGAATTTTATCACTGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2500
Approximate temperature
55°C
  
PCR data   Exp. ID 32370
Forward primer (5'-3')
ATGGCCGTTTGAGTCTCAAAAGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTCCAAACGAATTTTATCACTGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2500
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g09850  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7677 marker 7677
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