SGN Marker C2_At3g10690

SGN-M7692
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304079 (SGN)
125018 (CGN)
---
Capsicum annuumSingleSGN-U202556---
Lycopersicon CombinedSingleSGN-U217769---
Solanum tuberosumMultipleSGN-U258129---
ArabidopsisSingleAt3g10690 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26118)
Chromosome
3
Position
3.34 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41363
Forward primer (5'-3')
TTGTTTGCCGGGCCCATGAC
Accessions and product sizes
Solanum lycopersicum TA209
100
Solanum pennellii TA56
100
Approximate temperature
55°C
Reverse primer (5'-3')
TGCAGTTCGGCTGCATTCAGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11010
Forward primer (5'-3')
TTGTTTGCCGGGCCCATGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCAGTTCGGCTGCATTCAGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 11011
Forward primer (5'-3')
TTGTTTGCCGGGCCCATGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCAGTTCGGCTGCATTCAGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 11012
Forward primer (5'-3')
TTGTTTGCCGGGCCCATGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCAGTTCGGCTGCATTCAGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 400
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g10690  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7692 marker 7692
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