SGN Marker C2_At3g13330

SGN-M7727
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304203 (SGN)
121731 (CGN)
---
Capsicum annuumSingleSGN-U196195---
Lycopersicon CombinedSingleSGN-U217411---
Solanum tuberosumSingleSGN-U252801---
ArabidopsisSingleAt3g13330 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26155)
Chromosome
3
Position
4.32 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41379
Forward primer (5'-3')
AAGATCCTCGGTTCTGCTGGATG
Accessions and product sizes
Solanum lycopersicum TA209
400
Solanum pennellii TA56
400
Approximate temperature
55°C
Reverse primer (5'-3')
TTTGGCCAGGGTCGACAAATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11042
Forward primer (5'-3')
AAGATCCTCGGTTCTGCTGGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTGGCCAGGGTCGACAAATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1500
Approximate temperature
53°C
  
PCR data   Exp. ID 11043
Forward primer (5'-3')
AAGATCCTCGGTTCTGCTGGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTGGCCAGGGTCGACAAATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1500
Approximate temperature
53°C
  
PCR data   Exp. ID 11044
Forward primer (5'-3')
AAGATCCTCGGTTCTGCTGGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTGGCCAGGGTCGACAAATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1500
Approximate temperature
53°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g13330F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At3g13330  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7727 marker 7727
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