SGN Marker C2_At3g20720

SGN-M7820
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302701 (SGN)
119649 (CGN)
---
Lycopersicon CombinedSingleSGN-U226967---
Solanum tuberosumSingleSGN-U256438---
ArabidopsisSingleAt3g20720 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26251)
Chromosome
3
Position
7.24 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41421
Forward primer (5'-3')
TGGCGCAGGAGCAATCAGTCAACTAAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TTCTGCATGTTCTCCAGTTTCTGACTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11116
Forward primer (5'-3')
TGGCGCAGGAGCAATCAGTCAACTAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTGCATGTTCTCCAGTTTCTGACTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 600
Approximate temperature
55°C
  
PCR data   Exp. ID 11117
Forward primer (5'-3')
TGGCGCAGGAGCAATCAGTCAACTAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTGCATGTTCTCCAGTTTCTGACTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 600
Approximate temperature
55°C
  
PCR data   Exp. ID 11118
Forward primer (5'-3')
TGGCGCAGGAGCAATCAGTCAACTAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTGCATGTTCTCCAGTTTCTGACTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 600
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g20720F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At3g20720  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7820 marker 7820
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