SGN Marker C2_At3g24490

SGN-M7864
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle308509 (SGN)
126839 (CGN)
---
Lycopersicon CombinedSingleSGN-U218404---
Solanum tuberosumSingleSGN-U262277---
ArabidopsisSingleAt3g24490 on TAIR---
Mapped locations  
Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49247)
Chromosome
12
Position
44.20 MB
Confidence
uncalculated
Protocol
CAPS


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47183)
Chromosome
12
Position
61.00 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Pepper-COSII   
Map version
58 (location: 41428)
Chromosome
12
Position
52.40 cM
Confidence
I
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43404
Forward primer (5'-3')
AGGAGAAGATGAAGTTTGCAGAGACTG
Accessions and product sizes
Approximate temperature
60°C
Reverse primer (5'-3')
ATTCTTGCAATTTCTGCCTGAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38512)
Chromosome
12
Position
59.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39736
Forward primer (5'-3')
AGGAGAAGATGAAGTTTGCAGAGACTG
Accessions and product sizes
Solanum pennellii TA56
500
Solanum lycopersicum TA209
550
Approximate temperature
55°C
Reverse primer (5'-3')
ATTCTTGCAATTTCTGCCTGAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26296)
Chromosome
3
Position
8.91 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At3g24490  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7864 marker 7864
User comments 
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