SGN Marker C2_At3g25920

SGN-M7878
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle307646 (SGN)
129533 (CGN)
---
Capsicum annuumSingleSGN-U201110---
Lycopersicon CombinedMultipleSGN-U215121---
Solanum tuberosumSingleSGN-U244973---
ArabidopsisSingleAt3g25920 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26310)
Chromosome
3
Position
9.49 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41442
Forward primer (5'-3')
TGAAATCTAAGTCAATAACAAGAACCCC
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TCTTCTATGTCCTTCAAGTTCACAGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11151
Forward primer (5'-3')
ACTTCCTAAGTTGAGAGGAATTGCTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGTGGAAGTCTCCTTTCTCTTCCTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 3000
Approximate temperature
55°C
  
PCR data   Exp. ID 11152
Forward primer (5'-3')
ACTTCCTAAGTTGAGAGGAATTGCTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGTGGAAGTCTCCTTTCTCTTCCTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 3000
Approximate temperature
55°C
  
PCR data   Exp. ID 11153
Forward primer (5'-3')
ACTTCCTAAGTTGAGAGGAATTGCTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGTGGAAGTCTCCTTTCTCTTCCTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 3000
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At3g25920  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7878 marker 7878
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