SGN Marker SSR115
SGN-M788
Synonyms |
Locus associations |
SSR info |
Annealing temperatures: Low: 50 High: 40.909
Repeat motif: AT Repeat number: 16
Repeat motif: Repeat number:
Forward primer: CACCCTTTATTCAGATTCCTCT
Reverse primer: ATTGAGGGTATGCAACAGCC
Predicted size: 211
Derivations |
This marker was derived from EST read SGN-E143578
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Sun1642 x LA1589 |
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| ![]() Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589 |
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| ![]() Tomato-EXPIMP 2008 |
| ![]() Tomato-EXPEN 2000 |
Other PCR data |
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Overgo hybridization and physical mapping |
SSR115 was used as an overgo probe on plate 11 [well C10]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
A sequence
TTGTGGAGTCTGGTATGGTTGTTG
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B sequence
GACCCTGTACCTAAACCAACAACC
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AB sequence
TTGTGGAGTCTGGTATGGTTGTTGGTTTAG
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Marker sequence
GGTTTATTGCTTCAAGGATTCTGTCACACCTCTTTCTCCCCCGACAAATC
CTTCACTTTCCTTCTTTTCCTCTCAATTTCCCTATAAATTCTCCATAAAC CCTAATAAACCAAACGCCAAATAACATTATCTTCTCCCATTCCACAAGTT CCAATCTTGATAATCATTTTTTTCTTTTCTTTTTACAGAATAAAGAAACA CCCTTTATTCAGATTCCTCTGTTTCTTGATTTTTCATCTATATATATATA TATATATATATATATATATATAGTCTAATGGTTTCAATCTTCAATTTACT CAAACCCCTTTAACATTTTTATGCTAAAGATTCAATCTTTATCTTGAAAT TTTTGATATTTCCTTAATTGTTGTGTTGTTTTTAGCAATGGCTGTTGCAT ACCCTCAATTTTTTGGGACAAAGAAAGTTGACACTTCATTGATGGTGTCA TCATCTTCCTCTGTTTCCCCTGTTATTNTATCTCAAGATGAGTTGAAAAA GATAGCTGCTTATAAAGCTGTGGAGTTTGTGGAGTCTGGTATGGTTGTTG GTTTAGGTACAGGGTCAACAGCAAAGCATGCTGTTGATAAAATAGCTGAG CTTTTACATAGTGGTAAGTTAAAGAACATTGTAGGGATTCCCACTTCAAA GATTACTCATGAACAAGCTG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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