SGN Marker C2_At3g32930

SGN-M7916
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306624 (SGN)
126108 (CGN)
---
Lycopersicon CombinedSingleSGN-U217074---
Solanum tuberosumSingleSGN-U250432---
ArabidopsisSingleAt3g32930 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26349)
Chromosome
3
Position
13.49 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41458
Forward primer (5'-3')
AAGCTGGTTTAGCTGGATCTCC
Accessions and product sizes
Solanum lycopersicum TA209
275
Solanum pennellii TA56
275
Approximate temperature
58°C
Reverse primer (5'-3')
TCTGATAGCAAGGAAGCAATGG
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
175
Solanum pennellii TA56
275
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11169
Forward primer (5'-3')
AAGCTGGTTTAGCTGGATCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGATAGCAAGGAAGCAATGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2100
Approximate temperature
53°C
  
PCR data   Exp. ID 11170
Forward primer (5'-3')
AAGCTGGTTTAGCTGGATCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGATAGCAAGGAAGCAATGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2000
Approximate temperature
53°C
  
PCR data   Exp. ID 11171
Forward primer (5'-3')
AAGCTGGTTTAGCTGGATCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGATAGCAAGGAAGCAATGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2000
Approximate temperature
53°C
  
PCR data   Exp. ID 32635
Forward primer (5'-3')
AAGCTGGTTTAGCTGGATCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGATAGCAAGGAAGCAATGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2100
Approximate temperature
55°C
  
PCR data   Exp. ID 33044
Forward primer (5'-3')
AAGCTGGTTTAGCTGGATCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGATAGCAAGGAAGCAATGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2100
Approximate temperature
55°C
  
PCR data   Exp. ID 33045
Forward primer (5'-3')
AAGCTGGTTTAGCTGGATCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGATAGCAAGGAAGCAATGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2100
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g32930  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7916 marker 7916
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