Sol Genomics Network

SGN Marker C2_At3g43230

SGN-M7918
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	304184 (SGN) 120662 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U237360	-	-	-
Solanum tuberosum	Single	SGN-U249839	-	-	-
Arabidopsis	Single	At3g43230 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 38526)
Chromosome 7
Position 16.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 41459

Forward primer (5'-3')

AGTGTGTGATACCTGCTATGATAGGCTTG

Accessions and product sizes

Solanum pennellii TA56

350

Solanum lycopersicum TA209

350

Approximate temperature

55°C

Reverse primer (5'-3')

ACCGGGTATGGACCTCTCAGGATTC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

350

Solanum pennellii TA56

275

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26351)
Chromosome 3
Position 15.22 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11172
Forward primer (5'-3') ACGAAGGTCTGATGGTTCATGGTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 100	Approximate temperature 55°C

PCR data Exp. ID 11173
Forward primer (5'-3') ACGAAGGTCTGATGGTTCATGGTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 100	Approximate temperature 55°C

PCR data Exp. ID 11174
Forward primer (5'-3') ACGAAGGTCTGATGGTTCATGGTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 100	Approximate temperature 55°C

PCR data Exp. ID 12285
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 850	Approximate temperature 55°C

PCR data Exp. ID 12286
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 800	Approximate temperature 55°C

PCR data Exp. ID 12287
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 750	Approximate temperature 55°C

PCR data Exp. ID 12288
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 850	Approximate temperature 55°C

PCR data Exp. ID 12289
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 750	Approximate temperature 55°C

PCR data Exp. ID 12290
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 750	Approximate temperature 55°C

PCR data Exp. ID 12291
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 800	Approximate temperature 55°C

PCR data Exp. ID 12292
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 800	Approximate temperature 55°C

PCR data Exp. ID 12293
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Physalis TA1367: 750	Approximate temperature 55°C

PCR data Exp. ID 12294
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 750	Approximate temperature 55°C

PCR data Exp. ID 12295
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 750	Approximate temperature 55°C

PCR data Exp. ID 12296
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Coffea canephora BP409: 700	Approximate temperature 55°C

PCR data Exp. ID 33348
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 750	Approximate temperature 55°C

PCR data Exp. ID 33349
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 750	Approximate temperature 55°C

PCR data Exp. ID 33350
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 800	Approximate temperature 55°C

PCR data Exp. ID 33351
Forward primer (5'-3') ACATCATTGTCGGTTTTGTGGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCAATCTGCGCACCCCATCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 800	Approximate temperature 55°C