SGN Marker C2_At3g46550

SGN-M7930
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303117 (SGN)
121626 (CGN)
---
Lycopersicon CombinedSingleSGN-U226152---
Solanum tuberosumSingleSGN-U247449---
ArabidopsisSingleAt3g46550 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26364)
Chromosome
3
Position
17.15 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41463
Forward primer (5'-3')
ACAATTCTCATTCCCCATTTTACCC
Accessions and product sizes
Solanum pennellii TA56
1600
Solanum lycopersicum TA209
1600
Approximate temperature
58°C
Reverse primer (5'-3')
ACTACCAATTGGATTCTTCCCAAAG
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
700
Solanum pennellii TA56
1400
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g46550  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7930 marker 7930
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