SGN Marker C2_At3g52090

SGN-M7990
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple300493 (SGN)
123249 (CGN)
---
Lycopersicon CombinedSingleSGN-U225664---
Solanum tuberosumSingleSGN-U252205---
ArabidopsisSingleAt3g52090 on TAIR---
Mapped locations  
Map: Solanum michoacanum 2011   
Map version
155 (location: 109239)
Chromosome
11
Position
54.50 cM
Confidence
uncalculated
Protocol
CAPS


Solanum michoacanum 2011

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38550)
Chromosome
11
Position
82.70 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 41483
Forward primer (5'-3')
AGGGATACGAAGATCATGAATGCAGC
Accessions and product sizes
Solanum pennellii TA56
1000
Solanum lycopersicum TA209
1000
Approximate temperature
58°C
Reverse primer (5'-3')
ACTCTTCAGATGATCAAGTTCCTTGTC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
1000
Solanum pennellii TA56
650
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26424)
Chromosome
3
Position
19.33 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g52090  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7990 marker 7990
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