SGN Marker C2_At3g55330

SGN-M8044
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304313 (SGN)
121590 (CGN)
---
Lycopersicon CombinedSingleSGN-U217618---
Solanum tuberosumSingleSGN-U249226---
ArabidopsisSingleAt3g55330 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26480)
Chromosome
3
Position
20.53 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41500
Forward primer (5'-3')
TCCTCTATCCTTTTGGGTGGCAG
Accessions and product sizes
Solanum pennellii TA56
250
Solanum lycopersicum TA209
250
Approximate temperature
55°C
Reverse primer (5'-3')
AACTTTATCTTCACCTTCAACAACGAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11251
Forward primer (5'-3')
TCCTCTATCCTTTTGGGTGGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACTTTATCTTCACCTTCAACAACGAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 11252
Forward primer (5'-3')
TCCTCTATCCTTTTGGGTGGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACTTTATCTTCACCTTCAACAACGAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 11253
Forward primer (5'-3')
TCCTCTATCCTTTTGGGTGGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACTTTATCTTCACCTTCAACAACGAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g55330  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8044 marker 8044
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