SGN Marker C2_At3g56040

SGN-M8055
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309989 (SGN)
126095 (CGN)
---
Lycopersicon CombinedSingleSGN-U225880---
Solanum tuberosumSingleSGN-U264806---
ArabidopsisSingleAt3g56040 on TAIR---
Mapped locations  
Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49258)
Chromosome
6
Position
30.70 MB
Confidence
uncalculated
Protocol
CAPS


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47194)
Chromosome
6
Position
30.00 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46705)
Chromosome
3
Position
19.70 cM
Confidence
F(LOD3)
Protocol
CAPS


Tobacco N. tomentosiformis

Map: Pepper-COSII   
Map version
58 (location: 41450)
Chromosome
6
Position
49.50 cM
Confidence
F(LOD3)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43426
Forward primer (5'-3')
TCGCTATTGGATATAATGCGTAATGC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AACTCAGCAACCTCTATTAGCAACTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38576)
Chromosome
6
Position
19.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39772
Forward primer (5'-3')
TCGCTATTGGATATAATGCGTAATGC
Accessions and product sizes
Solanum pennellii TA56
2000
Solanum lycopersicum TA209
2000
Approximate temperature
58°C
Reverse primer (5'-3')
AACTCAGCAACCTCTATTAGCAACTC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
1050
Solanum pennellii TA56
1800
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26491)
Chromosome
3
Position
20.81 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text

Genomic location of C2_At3g56040  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8055 marker 8055
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