SGN Marker C2_At4g02600

SGN-M8169
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304061 (SGN)
121331 (CGN)		---
Solanum tuberosumSingleSGN-U251748---
ArabidopsisSingleAt4g02600 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26606)
Chromosome
4
Position
1.15 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41535
Forward primer (5'-3')
ATGGTTCTGTCAGCAAGTCAGATTATG
Accessions and product sizes
Solanum pennellii TA56
2300
Solanum lycopersicum TA209
2300
Approximate temperature
55°C
Reverse primer (5'-3')
ACCGACGACAGTCTTAAAATCATCTTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1200
Solanum lycopersicum TA209
1000
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11338
Forward primer (5'-3')
ATGGTTCTGTCAGCAAGTCAGATTATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGACGACAGTCTTAAAATCATCTTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 230
 Approximate temperature
55°C
  
PCR data   Exp. ID 11339
Forward primer (5'-3')
ATGGTTCTGTCAGCAAGTCAGATTATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGACGACAGTCTTAAAATCATCTTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 230
 Approximate temperature
55°C
  
PCR data   Exp. ID 11340
Forward primer (5'-3')
ATGGTTCTGTCAGCAAGTCAGATTATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGACGACAGTCTTAAAATCATCTTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 230
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U277334
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At4g02600F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At4g02600F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g02600  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8169 marker 8169
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