SGN Marker C2_At4g09650

SGN-M8204
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U196644---
Lycopersicon CombinedSingleSGN-U215141---
Solanum tuberosumSingleSGN-U245774---
ArabidopsisSingleAt4g09650 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26643)
Chromosome
4
Position
6.10 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41545
Forward primer (5'-3')
ATGGCGGCTCTACAACAAACTCC
Accessions and product sizes
Solanum lycopersicum TA209
880
Solanum pennellii TA56
920
Approximate temperature
55°C
Reverse primer (5'-3')
ATTGAATATCCCCAATTTCAAGCTG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
920
Solanum lycopersicum TA209
880
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11369
Forward primer (5'-3')
ATGGCGGCTCTACAACAAACTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTGAATATCCCCAATTTCAAGCTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 700
 Approximate temperature
55°C
  
PCR data   Exp. ID 11370
Forward primer (5'-3')
ATGGCGGCTCTACAACAAACTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTGAATATCCCCAATTTCAAGCTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 700
 Approximate temperature
55°C
  
PCR data   Exp. ID 11371
Forward primer (5'-3')
ATGGCGGCTCTACAACAAACTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTGAATATCCCCAATTTCAAGCTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 750
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U215141
SGN-U271733
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g09650  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8204 marker 8204
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