Sol Genomics Network

SGN Marker C2_At4g12590

SGN-M8231
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	300841 (SGN) 122923 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U199571	-	-	-
Lycopersicon Combined	Single	SGN-U216982	-	-	-
Arabidopsis	Single	At4g12590 on TAIR	-	-	-

Mapped locations

Map: Pepper-COSII
Map version 58 (location: 41470)
Chromosome 5
Position 82.10 cM
Confidence I
Protocol dCAPS

Pepper-COSII

PCR data Exp. ID 43446

Forward primer (5'-3')

ACATGGCTATGGATATGATGAAGAAG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ACCAAGCTCTTAATATTGACAAAGAAT

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38635)
Chromosome 5
Position 105.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39820

Forward primer (5'-3')

ACATGGCTATGGATATGATGAAGAAG

Accessions and product sizes

Solanum pennellii TA56

150

Solanum lycopersicum TA209

150

Approximate temperature

55°C

Reverse primer (5'-3')

ACCCAGAGAAGAAGAAGTTGACCC

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

100

Solanum lycopersicum TA209

150

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26672)
Chromosome 4
Position 7.45 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11401
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 150	Approximate temperature 55°C

PCR data Exp. ID 11402
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 150	Approximate temperature 55°C

PCR data Exp. ID 11403
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 150	Approximate temperature 55°C

PCR data Exp. ID 13401
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 200	Approximate temperature 55°C

PCR data Exp. ID 13402
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 150	Approximate temperature 55°C

PCR data Exp. ID 13403
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 150	Approximate temperature 55°C

PCR data Exp. ID 13404
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 150	Approximate temperature 55°C

PCR data Exp. ID 13405
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 150	Approximate temperature 55°C

PCR data Exp. ID 13406
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 150	Approximate temperature 55°C

PCR data Exp. ID 13407
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 150	Approximate temperature 55°C

PCR data Exp. ID 13408
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 200	Approximate temperature 55°C

PCR data Exp. ID 13409
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Physalis TA1367: 150	Approximate temperature 55°C

PCR data Exp. ID 13410
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 200	Approximate temperature 55°C

PCR data Exp. ID 13411
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 150	Approximate temperature 55°C

PCR data Exp. ID 13412
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 150	Approximate temperature 55°C

PCR data Exp. ID 13413
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 200	Approximate temperature 55°C

PCR data Exp. ID 13414
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Coffea canephora BP409: 250	Approximate temperature 55°C

PCR data Exp. ID 33090
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 150	Approximate temperature 55°C

PCR data Exp. ID 33091
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 150	Approximate temperature 55°C

PCR data Exp. ID 33092
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 150	Approximate temperature 55°C

PCR data Exp. ID 33093
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 150	Approximate temperature 55°C

PCR data Exp. ID 11404
Forward primer (5'-3') ACATGGCTATGGATATGATGAAGAAG	Digested band sizes (using HinfI) Solanum lycopersicum LA925: 150 Solanum pennellii LA716: 100	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCCAGAGAAGAAGAAGTTGACCC	Enzymes All possible enzymes for pennellii and and lycopersicum: HinfI
Accessions and product sizes Solanum pennellii LA716: 150 Solanum lycopersicum LA925: 150	Approximate temperature 55°C