SGN Marker C2_At4g14110

SGN-M8242
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301802 (SGN)
122895 (CGN)
---
Capsicum annuumSingleSGN-U197229---
Lycopersicon CombinedSingleSGN-U231736---
ArabidopsisSingleAt4g14110 on TAIR---
Mapped locations  
Map: Solanum michoacanum 2011   
Map version
155 (location: 109242)
Chromosome
1
Position
90.99 cM
Confidence
uncalculated
Protocol
CAPS


Solanum michoacanum 2011

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38637)
Chromosome
1
Position
136.30 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39822
Forward primer (5'-3')
AGCTCCTTCTTTCCGCTTATTCAAC
Accessions and product sizes
Solanum pennellii TA56
Multiple
Approximate temperature
50°C
Reverse primer (5'-3')
TGGAAGACATATTCAGTCAAGCGCTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26683)
Chromosome
4
Position
8.13 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 32452
Forward primer (5'-3')
AGCTCCTTCTTTCCGCTTATTCAAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGAAGACATATTCAGTCAAGCGCTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1100
Approximate temperature
55°C
  
PCR data   Exp. ID 32453
Forward primer (5'-3')
AGCTCCTTCTTTCCGCTTATTCAAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGAAGACATATTCAGTCAAGCGCTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1100
Approximate temperature
55°C
  
PCR data   Exp. ID 32454
Forward primer (5'-3')
AGCTCCTTCTTTCCGCTTATTCAAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGAAGACATATTCAGTCAAGCGCTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1100
Approximate temperature
55°C
  
PCR data   Exp. ID 32455
Forward primer (5'-3')
AGCTCCTTCTTTCCGCTTATTCAAC
Digested band sizes (using RsaI)
Solanum lycopersicum LA925: 100+400+600
Solanum pennellii LA716: 400+700
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGAAGACATATTCAGTCAAGCGCTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1100
Solanum pennellii LA716: 1100
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text

Genomic location of C2_At4g14110  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8242 marker 8242
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)