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SGN Marker C2_At4g17020

SGN-M8277
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Lycopersicon CombinedSingleSGN-U219759---
Solanum tuberosumSingleSGN-U256229---
ArabidopsisSingleAt4g17020 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26718)
Chromosome
4
Position
9.58 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41569
Forward primer (5'-3')
ACCCTAGATTGAGAAATTGAAGTATTG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TAGGAAGCCTCACAGTGATATTAGAAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11420
Forward primer (5'-3')
ACCCTAGATTGAGAAATTGAAGTATTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGGAAGCCTCACAGTGATATTAGAAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2000
Approximate temperature
55°C
  
PCR data   Exp. ID 11421
Forward primer (5'-3')
ACCCTAGATTGAGAAATTGAAGTATTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGGAAGCCTCACAGTGATATTAGAAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2000
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At4g17020  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8277 marker 8277
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