SGN Marker C2_At4g17040

SGN-M8278
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple308769 (SGN)
129203 (CGN)
---
Capsicum annuumSingleSGN-U197513---
Lycopersicon CombinedSingleSGN-U214346---
Solanum tuberosumMultipleSGN-U245188---
ArabidopsisSingleAt4g17040 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26719)
Chromosome
4
Position
9.59 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41570
Forward primer (5'-3')
TCGACGACCTTCATCTCCCCATTC
Accessions and product sizes
Solanum pennellii TA56
250
Solanum lycopersicum TA209
250
Approximate temperature
55°C
Reverse primer (5'-3')
ACATTCCCAAGTAGACGATTCGATTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11422
Forward primer (5'-3')
TCGACGACCTTCATCTCCCCATTC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
ACATTCCCAAGTAGACGATTCGATTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2700
Approximate temperature
Unknown
  
PCR data   Exp. ID 11423
Forward primer (5'-3')
TCGACGACCTTCATCTCCCCATTC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
ACATTCCCAAGTAGACGATTCGATTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2700
Approximate temperature
Unknown
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At4g17040  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8278 marker 8278
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