SGN Marker C2_At4g17380

SGN-M8283
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle307088 (SGN)
127795 (CGN)
---
Solanum tuberosumSingleSGN-U255268---
ArabidopsisSingleAt4g17380 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41474)
Chromosome
8
Position
25.60 cM
Confidence
F(LOD3)
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43450
Forward primer (5'-3')
CTTCAACTTGCAAATGTTCTCTTAATA
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AATTGCCAATAGATGCTCACAACAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38650)
Chromosome
8
Position
2.00 cM
Confidence
CF(LOD3)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39832
Forward primer (5'-3')
TGGTCATCCTTGCTCAAATTGGTTG
Accessions and product sizes
Solanum pennellii TA56
Multiple
Approximate temperature
50°C
Reverse primer (5'-3')
AATTGCCAATAGATGCTCACAACAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26724)
Chromosome
4
Position
9.71 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 32464
Forward primer (5'-3')
TGGTCATCCTTGCTCAAATTGGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AATTGCCAATAGATGCTCACAACAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 600
Approximate temperature
55°C
  
PCR data   Exp. ID 32465
Forward primer (5'-3')
TGGTCATCCTTGCTCAAATTGGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AATTGCCAATAGATGCTCACAACAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 600
Approximate temperature
55°C
  
PCR data   Exp. ID 32466
Forward primer (5'-3')
TGGTCATCCTTGCTCAAATTGGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AATTGCCAATAGATGCTCACAACAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 600
Approximate temperature
55°C
  
PCR data   Exp. ID 32467
Forward primer (5'-3')
TGGTCATCCTTGCTCAAATTGGTTG
Digested band sizes (using HinfI)
Solanum lycopersicum LA925: 475
Solanum pennellii LA716: 200+275
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AATTGCCAATAGATGCTCACAACAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 600
Solanum pennellii LA716: 600
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text

Genomic location of C2_At4g17380  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8283 marker 8283
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