SGN Marker C2_At4g19390

SGN-M8300
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310164 (SGN)
128829 (CGN)
---
Capsicum annuumMultipleSGN-U197151---
Lycopersicon CombinedSingleSGN-U230311---
Solanum tuberosumSingleSGN-U267189---
ArabidopsisSingleAt4g19390 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26741)
Chromosome
4
Position
10.58 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41575
Forward primer (5'-3')
TTCATGTGTGATTGCATCATTCCAAG
Accessions and product sizes
Solanum lycopersicum TA209
1750
Solanum pennellii TA56
1750
Approximate temperature
55°C
Reverse primer (5'-3')
TCCTTTGTCAAGATTGCTGATGAAGAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11428
Forward primer (5'-3')
TTCATGTGTGATTGCATCATTCCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTGTCAAGATTGCTGATGAAGAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 11429
Forward primer (5'-3')
TTCATGTGTGATTGCATCATTCCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTGTCAAGATTGCTGATGAAGAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 11430
Forward primer (5'-3')
TTCATGTGTGATTGCATCATTCCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTGTCAAGATTGCTGATGAAGAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 400
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At4g19390  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8300 marker 8300
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