Sol Genomics Network

SGN Marker C2_At4g20070

SGN-M8303
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	309271 (SGN) 127819 (CGN)	-	-	-
Lycopersicon Combined	Multiple	SGN-U219155	-	-	-
Solanum tuberosum	Single	SGN-U253010	-	-	-
Arabidopsis	Single	At4g20070 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46721)
Chromosome 2
Position 1.80 cM
Confidence I(LOD2)
Protocol dCAPS

Tobacco N. tomentosiformis

Map: Tobacco N. acuminata
Map version 89 (location: 46505)
Chromosome 2
Position 48.40 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. acuminata

Map: Tomato-EXPEN 2000
Map version 52 (location: 38659)
Chromosome 2
Position 29.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39837

Forward primer (5'-3')

ACCTAGAGAGGACCTTCCAGAGCCC

Accessions and product sizes

Solanum lycopersicum TA209

Multiple

Solanum pennellii TA56

Multiple

Approximate temperature

60°C

Reverse primer (5'-3')

AGGAATTCAGTGCCTTCAATGCAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26744)
Chromosome 4
Position 10.86 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 32476
Forward primer (5'-3') ACCTAGAGAGGACCTTCCAGAGCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGAATTCAGTGCCTTCAATGCAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 450	Approximate temperature 60°C

PCR data Exp. ID 32477
Forward primer (5'-3') ACCTAGAGAGGACCTTCCAGAGCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGAATTCAGTGCCTTCAATGCAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 450	Approximate temperature 60°C

PCR data Exp. ID 32478
Forward primer (5'-3') ACCTAGAGAGGACCTTCCAGAGCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGAATTCAGTGCCTTCAATGCAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 450	Approximate temperature 60°C

PCR data Exp. ID 32479
Forward primer (5'-3') ACCTAGAGAGGACCTTCCAGAGCCC	Digested band sizes (using HinfI) Solanum pennellii LA716: 450 Solanum lycopersicum LA925: 300	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGAATTCAGTGCCTTCAATGCAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 450 Solanum lycopersicum LA925: 450	Approximate temperature 60°C

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At4g20070

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8303 marker 8303

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
End Date:
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