SGN Marker C2_At4g21540

SGN-M8317
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310511 (SGN)
125828 (CGN)
---
Capsicum annuumSingleSGN-U201651---
Lycopersicon CombinedSingleSGN-U241747---
Solanum tuberosumMultipleSGN-U256362---
ArabidopsisSingleAt4g21540 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38663)
Chromosome
2
Position
68.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39841
Forward primer (5'-3')
AGTATTTAGTGACGATGTAAAGCC
Accessions and product sizes
Solanum pennellii TA56
550
Solanum lycopersicum TA209
550
Approximate temperature
55°C
Reverse primer (5'-3')
TGCGGGTATTACTCCAAGAGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26757)
Chromosome
4
Position
11.46 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11447
Forward primer (5'-3')
AGTATTTAGTGACGATGTAAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCGGGTATTACTCCAAGAGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1100
Approximate temperature
55°C
  
PCR data   Exp. ID 11448
Forward primer (5'-3')
AGTATTTAGTGACGATGTAAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCGGGTATTACTCCAAGAGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1100
Approximate temperature
55°C
  
PCR data   Exp. ID 11449
Forward primer (5'-3')
AGTATTTAGTGACGATGTAAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCGGGTATTACTCCAAGAGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1100
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At4g21540F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At4g21540  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8317 marker 8317
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