SGN Marker C2_At4g24440

SGN-M8351
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle311566 (SGN)
126018 (CGN)		---
Lycopersicon CombinedSingleSGN-U222784---
Solanum tuberosumSingleSGN-U249549---
ArabidopsisSingleAt4g24440 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26792)
Chromosome
4
Position
12.63 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41592
Forward primer (5'-3')
TCGACGATTGGGATGTGCTTGAC
Accessions and product sizes
Solanum pennellii TA56
3000
Solanum lycopersicum TA209
2800
Approximate temperature
55°C
Reverse primer (5'-3')
ACTTGAGTCTCCAAAGCTTCAGTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11474
Forward primer (5'-3')
TCGACGATTGGGATGTGCTTGAC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
ACTTGAGTCTCCAAAGCTTCAGTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2000
 Approximate temperature
53°C
  
PCR data   Exp. ID 11475
Forward primer (5'-3')
TCGACGATTGGGATGTGCTTGAC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
ACTTGAGTCTCCAAAGCTTCAGTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2200
 Approximate temperature
53°C
  
PCR data   Exp. ID 11476
Forward primer (5'-3')
TCGACGATTGGGATGTGCTTGAC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
ACTTGAGTCTCCAAAGCTTCAGTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2200
 Approximate temperature
53°C
  
Unigene blast matches for primers 
SGN-U222784
Universal primers for Asterid species 
No additional PCR data found.
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g24440  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8351 marker 8351
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