SGN Marker C2_At4g28450

SGN-M8391
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302443 (SGN)
120310 (CGN)
---
Capsicum annuumSingleSGN-U201395---
Lycopersicon CombinedSingleSGN-U226467---
Solanum tuberosumSingleSGN-U251643---
ArabidopsisSingleAt4g28450 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26832)
Chromosome
4
Position
14.06 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41602
Forward primer (5'-3')
ATCTCTTTGCCACAGCTGGTGCTC
Accessions and product sizes
Solanum pennellii TA56
1350
Solanum lycopersicum TA209
1350
Approximate temperature
55°C
Reverse primer (5'-3')
ACCGAACAGATGTAACTGTGTCTTTTC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
1250
Solanum pennellii TA56
1350
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11509
Forward primer (5'-3')
ATCTCTTTGCCACAGCTGGTGCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGAACAGATGTAACTGTGTCTTTTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
Approximate temperature
55°C
  
PCR data   Exp. ID 11510
Forward primer (5'-3')
ATCTCTTTGCCACAGCTGGTGCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGAACAGATGTAACTGTGTCTTTTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
Approximate temperature
55°C
  
PCR data   Exp. ID 11511
Forward primer (5'-3')
ATCTCTTTGCCACAGCTGGTGCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGAACAGATGTAACTGTGTCTTTTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At4g28450  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8391 marker 8391
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