Sol Genomics Network

SGN-M8431
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	300404 (SGN) 121469 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U221448	-	-	-
Arabidopsis	Single	At4g32180 on TAIR	-	-	-

Arabidopsis COSII

PCR data Exp. ID 41615

Forward primer (5'-3')

TGCGCATGATTTCATATAATATTGGTC

Accessions and product sizes

Solanum pennellii TA56

850

Solanum lycopersicum TA209

850

Approximate temperature

53°C

Reverse primer (5'-3')

TGAGTCCAAAACGCAGTGCATTGAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 11533
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1100	Approximate temperature 55°C

PCR data Exp. ID 11534
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1100	Approximate temperature 55°C

PCR data Exp. ID 11535
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1100	Approximate temperature 55°C

PCR data Exp. ID 13510
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1050	Approximate temperature 55°C

PCR data Exp. ID 13511
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1050	Approximate temperature 55°C

PCR data Exp. ID 13512
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 750	Approximate temperature 55°C

PCR data Exp. ID 13513
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 550	Approximate temperature 55°C

PCR data Exp. ID 13514
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 550	Approximate temperature 55°C

PCR data Exp. ID 13515
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 750	Approximate temperature 55°C

PCR data Exp. ID 13516
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 750	Approximate temperature 55°C

PCR data Exp. ID 13517
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 500+700	Approximate temperature 55°C

PCR data Exp. ID 13518
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Physalis TA1367: 1000	Approximate temperature 55°C

PCR data Exp. ID 13519
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1200+800	Approximate temperature 55°C

PCR data Exp. ID 13520
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1200+580	Approximate temperature 55°C

PCR data Exp. ID 13521
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Coffea canephora BP409: 1250	Approximate temperature 55°C

PCR data Exp. ID 33126
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 550	Approximate temperature 55°C

PCR data Exp. ID 33127
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 550	Approximate temperature 55°C

PCR data Exp. ID 33128
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 750	Approximate temperature 55°C

PCR data Exp. ID 33129
Forward primer (5'-3') TGCGCATGATTTCATATAATATTGGTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAGTCCAAAACGCAGTGCATTGAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 750	Approximate temperature 55°C