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SGN Marker C2_At4g32720

SGN-M8440
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309167 (SGN)
125876 (CGN)
---
Lycopersicon CombinedSingleSGN-U230844---
Solanum tuberosumSingleSGN-U246387---
ArabidopsisSingleAt4g32720 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26884)
Chromosome
4
Position
15.79 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41617
Forward primer (5'-3')
AAGAAACTGTCAAGAAGGTCATTCGTC
Accessions and product sizes
Solanum lycopersicum TA209
360
Solanum pennellii TA56
360
Approximate temperature
55°C
Reverse primer (5'-3')
ATCTTTTGGGAGATTACTATCACTGAAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11542
Forward primer (5'-3')
AAGAAACTGTCAAGAAGGTCATTCGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCTTTTGGGAGATTACTATCACTGAAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 11543
Forward primer (5'-3')
AAGAAACTGTCAAGAAGGTCATTCGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCTTTTGGGAGATTACTATCACTGAAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 11544
Forward primer (5'-3')
AAGAAACTGTCAAGAAGGTCATTCGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCTTTTGGGAGATTACTATCACTGAAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 150
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At4g32720  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8440 marker 8440
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