SGN Marker C2_At4g33480

SGN-M8454
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310997 (SGN)
130911 (CGN)		---
Lycopersicon CombinedSingleSGN-U219692---
ArabidopsisSingleAt4g33480 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26897)
Chromosome
4
Position
16.11 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41622
Forward primer (5'-3')
ACAACAAACTGGACCAGTGAAGAAACG
Accessions and product sizes
Solanum lycopersicum TA209
1800
Solanum pennellii TA56
1800
Approximate temperature
60°C
Reverse primer (5'-3')
AGACCACCCCTCGACATTTGTGCTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1800
Solanum lycopersicum TA209
1100+700
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g33480  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8454 marker 8454
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