Sol Genomics Network

SGN Marker C2_At4g33680

SGN-M8458
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	310411 (SGN) 132586 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U200881	-	-	-
Lycopersicon Combined	Single	SGN-U219686	-	-	-
Solanum tuberosum	Single	SGN-U247676	-	-	-
Arabidopsis	Single	At4g33680 on TAIR	-	-	-

Mapped locations

Map: Arabidopsis COSII
Map version 44 (location: 26901)
Chromosome 4
Position 16.17 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

PCR data Exp. ID 41625

Forward primer (5'-3')

TGGTGACACTACCGAGCCCATTC

Accessions and product sizes

Solanum pennellii TA56

1100

Solanum lycopersicum TA209

1100

Approximate temperature

55°C

Reverse primer (5'-3')

TCCTTGCTCAGCACCATAACCAC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

600

Solanum pennellii TA56

800

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 11552
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1400	Approximate temperature 55°C

PCR data Exp. ID 11553
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 450	Approximate temperature 55°C

PCR data Exp. ID 11554
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 450	Approximate temperature 55°C

PCR data Exp. ID 13536
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 500	Approximate temperature 55°C

PCR data Exp. ID 13537
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 480	Approximate temperature 55°C

PCR data Exp. ID 13538
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 500	Approximate temperature 55°C

PCR data Exp. ID 13539
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 500	Approximate temperature 55°C

PCR data Exp. ID 13540
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 500	Approximate temperature 55°C

PCR data Exp. ID 13541
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 500	Approximate temperature 55°C

PCR data Exp. ID 13542
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Physalis TA1367: 500	Approximate temperature 55°C

PCR data Exp. ID 13543
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 480	Approximate temperature 55°C

PCR data Exp. ID 13544
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 480	Approximate temperature 55°C

PCR data Exp. ID 13545
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 480	Approximate temperature 55°C

PCR data Exp. ID 32645
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 480	Approximate temperature 55°C

PCR data Exp. ID 33134
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 480	Approximate temperature 55°C

PCR data Exp. ID 33135
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 480	Approximate temperature 55°C

PCR data Exp. ID 33136
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 500	Approximate temperature 55°C

PCR data Exp. ID 33137
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 500	Approximate temperature 55°C

PCR data Exp. ID 33138
Forward primer (5'-3') TGGTGACACTACCGAGCCCATTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTGCTCAGCACCATAACCAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 500	Approximate temperature 55°C