SGN Marker C2_At4g34090

SGN-M8462
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304955 (SGN)
121764 (CGN)
---
Solanum tuberosumSingleSGN-U264785---
ArabidopsisSingleAt4g34090 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46734)
Chromosome
2
Position
6.70 cM
Confidence
I(LOD2)
Protocol
dCAPS


Tobacco N. tomentosiformis

Map: Tobacco N. acuminata   
Map version
89 (location: 46517)
Chromosome
2
Position
70.40 cM
Confidence
F(LOD3)
Protocol
CAPS


Tobacco N. acuminata

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38709)
Chromosome
2
Position
134.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39879
Forward primer (5'-3')
TGTTACGATGGCCAACTGCCCC
Accessions and product sizes
Solanum lycopersicum TA209
550
Solanum pennellii TA56
550
Approximate temperature
50°C
Reverse primer (5'-3')
TCTTCCACCAAAACCCTGTGAATG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
550
Solanum lycopersicum TA209
500
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26906)
Chromosome
4
Position
16.33 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 32535
Forward primer (5'-3')
TGTTACGATGGCCAACTGCCCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCCACCAAAACCCTGTGAATG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 32536
Forward primer (5'-3')
TGTTACGATGGCCAACTGCCCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCCACCAAAACCCTGTGAATG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 32537
Forward primer (5'-3')
TGTTACGATGGCCAACTGCCCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCCACCAAAACCCTGTGAATG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 32538
Forward primer (5'-3')
TGTTACGATGGCCAACTGCCCC
Digested band sizes (using AluI)
Solanum lycopersicum LA925: 275
Solanum pennellii LA716: 250
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCCACCAAAACCCTGTGAATG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 400
Solanum pennellii LA716: 400
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text

Genomic location of C2_At4g34090  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8462 marker 8462
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