SGN Marker C2_At4g34660

SGN-M8474
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304802 (SGN)
123350 (CGN)		---
Capsicum annuumSingleSGN-U203502---
Lycopersicon CombinedSingleSGN-U221121---
ArabidopsisSingleAt4g34660 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26918)
Chromosome
4
Position
16.55 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41634
Forward primer (5'-3')
AGGCTTTACATATCCACTCGTGCTGC
Accessions and product sizes
Solanum pennellii TA56
150
Solanum lycopersicum TA209
150
Approximate temperature
55°C
Reverse primer (5'-3')
TCAACACCACGGACAATATCCCTTTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11572
Forward primer (5'-3')
AGGCTTTACATATCCACTCGTGCTGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAACACCACGGACAATATCCCTTTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 700
 Approximate temperature
55°C
  
PCR data   Exp. ID 11573
Forward primer (5'-3')
AGGCTTTACATATCCACTCGTGCTGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAACACCACGGACAATATCCCTTTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 700
 Approximate temperature
55°C
  
PCR data   Exp. ID 11574
Forward primer (5'-3')
AGGCTTTACATATCCACTCGTGCTGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAACACCACGGACAATATCCCTTTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 700
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U221121
SGN-U281088
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g34660  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8474 marker 8474
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