SGN Marker C2_At4g36530

SGN-M8491
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300886 (SGN)
123470 (CGN)
---
Lycopersicon CombinedSingleSGN-U238639---
ArabidopsisSingleAt4g36530 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38719)
Chromosome
2
Position
89.10 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39889
Forward primer (5'-3')
AGATTTGCTAGGCTTTGGTTGGAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AGTGAATCCCCAAACTGTCCTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26936)
Chromosome
4
Position
17.24 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11586
Forward primer (5'-3')
AGATTTGCTAGGCTTTGGTTGGAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGTGAATCCCCAAACTGTCCTGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 11587
Forward primer (5'-3')
AGATTTGCTAGGCTTTGGTTGGAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGTGAATCCCCAAACTGTCCTGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 11588
Forward primer (5'-3')
AGATTTGCTAGGCTTTGGTTGGAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGTGAATCCCCAAACTGTCCTGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At4g36530F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At4g36530  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8491 marker 8491
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