SGN Marker C2_At4g37090

SGN-M8499
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle308927 (SGN)
130094 (CGN)		---
Capsicum annuumSingleSGN-U198106---
Lycopersicon CombinedSingleSGN-U218978---
Solanum tuberosumMultipleSGN-U247408---
ArabidopsisSingleAt4g37090 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26944)
Chromosome
4
Position
17.48 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41642
Forward primer (5'-3')
TCAAAACAATGAGGAGATTAGAAAAGTTG
Accessions and product sizes
Solanum pennellii TA56
500
Solanum lycopersicum TA209
500
Approximate temperature
55°C
Reverse primer (5'-3')
ATCAGGCAGCATCCCTCTATTGTCC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11590
Forward primer (5'-3')
TCAAAACAATGAGGAGATTAGAAAAGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCAGGCAGCATCCCTCTATTGTCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1300
 Approximate temperature
55°C
  
PCR data   Exp. ID 11591
Forward primer (5'-3')
TCAAAACAATGAGGAGATTAGAAAAGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCAGGCAGCATCCCTCTATTGTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1350
 Approximate temperature
55°C
  
PCR data   Exp. ID 11592
Forward primer (5'-3')
TCAAAACAATGAGGAGATTAGAAAAGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCAGGCAGCATCCCTCTATTGTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1350
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U218978
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At4g37090F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At4g37090F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g37090  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8499 marker 8499
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