SGN Marker C2_At4g37280

SGN-M8503
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302977 (SGN)
121627 (CGN)		---
Solanum tuberosumSingleSGN-U247574---
ArabidopsisSingleAt4g37280 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41499)
Chromosome
2
Position
107.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43475
Forward primer (5'-3')
AAGAAGCAACTGGTTGATGATTGGG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TCCTTTTTGGATCGGTATTCAAGGTA
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38721)
Chromosome
2
Position
135.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39891
Forward primer (5'-3')
AAGAAGCAACTGGTTGATGATTGGG
Accessions and product sizes
Solanum lycopersicum TA209
400
Solanum pennellii TA56
400
Approximate temperature
55°C
Reverse primer (5'-3')
TCCTTTTTGGATCGGTATTCAAGGTA
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26948)
Chromosome
4
Position
17.55 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11593
Forward primer (5'-3')
AAGAAGCAACTGGTTGATGATTGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTTTGGATCGGTATTCAAGGTA
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 750
 Approximate temperature
55°C
  
PCR data   Exp. ID 11594
Forward primer (5'-3')
AAGAAGCAACTGGTTGATGATTGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTTTGGATCGGTATTCAAGGTA
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 750
 Approximate temperature
55°C
  
PCR data   Exp. ID 11595
Forward primer (5'-3')
AAGAAGCAACTGGTTGATGATTGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTTTGGATCGGTATTCAAGGTA
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 750
 Approximate temperature
55°C
  
PCR data   Exp. ID 11596
Forward primer (5'-3')
AAGAAGCAACTGGTTGATGATTGGG
Digested band sizes (using TaqI)
Solanum lycopersicum LA925: 600
Solanum pennellii LA716: 750
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTTTGGATCGGTATTCAAGGTA
Enzymes
All possible enzymes for pennellii and and lycopersicum: AluI,ApoI,BclI,BslI,BtgI,CfoI/HhaI,DpnII,EcoO109I,HincII,Hpy188I,MspI,NcoI,StyI,TaqI
All possible enzymes for lycopersicum and pimpinellifolium: ApoI,BglII,BstYI,CfoI/HhaI,DpnII,PflFI
   
Accessions and product sizes
Solanum lycopersicum LA925: 750
Solanum pennellii LA716: 750
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U274376
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At4g37280F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At4g37280F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g37280  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8503 marker 8503
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