SGN Marker C2_At5g01350

SGN-M8538
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306990 (SGN)
128100 (CGN)		---
Capsicum annuumSingleSGN-U199482---
Lycopersicon CombinedSingleSGN-U219878---
Solanum tuberosumMultipleSGN-U253564---
ArabidopsisSingleAt5g01350 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41502)
Chromosome
10
Position
71.60 cM
Confidence
F(LOD3)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43478
Forward primer (5'-3')
GCATACACTCGTTTGGAGGGTTG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TTGGGAAAGGTACAGCCCTTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38733)
Chromosome
10
Position
75.70 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 41654
Forward primer (5'-3')
TCCAATCTCAGCCATGGCTGG
Accessions and product sizes
Solanum pennellii TA56
2200
Solanum lycopersicum TA209
2200
Approximate temperature
55°C
Reverse primer (5'-3')
TCTCTTTGATGTCCTCACTGCAAATC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
1400
Solanum pennellii TA56
1400
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26986)
Chromosome
5
Position
0.15 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g01350  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8538 marker 8538
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)