SGN Marker C2_At5g01650

SGN-M8544
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple299376 (SGN)
125241 (CGN)
---
Capsicum annuumSingleSGN-U197613---
Lycopersicon CombinedMultipleSGN-U214575---
Solanum tuberosumSingleSGN-U247023---
ArabidopsisSingleAt5g01650 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26992)
Chromosome
5
Position
0.24 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41656
Forward primer (5'-3')
TCTGAAGCTACCTCCACTGTTGCC
Accessions and product sizes
Solanum lycopersicum TA209
1100
Solanum pennellii TA56
1100
Approximate temperature
55°C
Reverse primer (5'-3')
TCTCAAGTATGTCAGCTATTGCAGCAC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
320+780
Solanum lycopersicum TA209
1100
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11615
Forward primer (5'-3')
TCTGAAGCTACCTCCACTGTTGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTCAAGTATGTCAGCTATTGCAGCAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 3000
Approximate temperature
55°C
  
PCR data   Exp. ID 32568
Forward primer (5'-3')
TCTGAAGCTACCTCCACTGTTGCC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TCTCAAGTATGTCAGCTATTGCAGCAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 3000
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At5g01650  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8544 marker 8544
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