SGN Marker C2_At5g07020

SGN-M8606
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304659 (SGN)
122947 (CGN)
---
Lycopersicon CombinedSingleSGN-U215371---
Solanum tuberosumMultipleSGN-U246837---
ArabidopsisSingleAt5g07020 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27059)
Chromosome
5
Position
2.18 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41682
Forward primer (5'-3')
TCGGGCTTCAACTGACGATTCTG
Accessions and product sizes
Solanum pennellii TA56
1650
Solanum lycopersicum TA209
1650
Approximate temperature
55°C
Reverse primer (5'-3')
TGTCTGCCCAGCAGTATCCTTCTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
250+450+500
Solanum lycopersicum TA209
850
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11656
Forward primer (5'-3')
TCGGGCTTCAACTGACGATTCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTCTGCCCAGCAGTATCCTTCTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1300
Approximate temperature
55°C
  
PCR data   Exp. ID 11657
Forward primer (5'-3')
TCGGGCTTCAACTGACGATTCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTCTGCCCAGCAGTATCCTTCTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1300
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At5g07020  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8606 marker 8606
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