SGN Marker C2_At5g10780

SGN-M8639
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302717 (SGN)
125158 (CGN)
---
Capsicum annuumSingleSGN-U201623---
Lycopersicon CombinedSingleSGN-U216572---
Solanum tuberosumSingleSGN-U249696---
ArabidopsisSingleAt5g10780 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27095)
Chromosome
5
Position
3.41 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41696
Forward primer (5'-3')
TGGGTATGGGGCGTAGATGG
Accessions and product sizes
Solanum lycopersicum TA209
400
Solanum pennellii TA56
400
Approximate temperature
55°C
Reverse primer (5'-3')
TGGGACTTCCAATTGGCTTCAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11677
Forward primer (5'-3')
TGGGTATGGGGCGTAGATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGACTTCCAATTGGCTTCAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 11678
Forward primer (5'-3')
TGGGTATGGGGCGTAGATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGACTTCCAATTGGCTTCAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 11679
Forward primer (5'-3')
TGGGTATGGGGCGTAGATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGACTTCCAATTGGCTTCAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 400
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At5g10780  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8639 marker 8639
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